Class: Taxon

A set of organisms asserted to represent a natural cohesive biological unit.

__

URI: schema:Taxon

diagram

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 An identifier chosen from the range given to your work package by WP1 direct
metadataPublisherId 1
PersonOrOrganization		 The MBO Persistent IDentifier (mPID) of the person who entered this row of da... direct
metadataDescribedForActionId 1
Action		 The Action which resulted in this metadata record being described direct
name 1
String		 A name/title direct
taxonScientificName 1
String		 The full scientific name, with authorship and date information if known direct
taxonKingdom 1
String		 The full scientific name of the kingdom in which the dwc:Taxon is classified direct
taxonPhylum 1
String		 The full scientific name of the phylum or division in which the dwc:Taxon is ... direct
taxonOrder 1
String		 The full scientific name of the order in which the dwc:Taxon is classified direct
taxonFamily 1
String		 The full scientific name of the family in which the dwc:Taxon is classified direct
taxonGenus 1
String		 The full scientific name of the genus in which the dwc:Taxon is classified direct
taxonSpecificEpithet 1
String		 The name of the first or species epithet of the dwc:scientificName direct
taxonomicStatus 1
String		 The status of the use of the dwc:scientificName as a label for a taxon direct
taxonVerbatimTaxonRank 1
String		 The taxonomic rank of the most specific name in the dwc:scientificName as it ... direct
taxonIdentifier 0..1
String		 An identifier for this specific taxon direct
taxonLifeScienceIdentifier 0..1
URN		 The life science identifier for this taxon, for example `urn:lsid:marinespeci... direct

Usages

used by used in type used
Dataset aboutTaxonMboIds range Taxon

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/marco-bolo/csv-input-classes

Mappings

Mapping Type Mapped Value
self schema:Taxon
native mbo:Taxon

LinkML Source

Direct

name: Taxon
extensions:
  csvw_virtual_triples:
    tag: csvw_virtual_triples
    value: "<> schema:additionalProperty <#ScientificName>,\n                    \
      \         <#Kingdom>,\n                             <#Phylum>,\n           \
      \                  <#Order>,\n                             <#Family>,\n    \
      \                         <#Genus>,\n                             <#SpecificEpithet>,\n\
      \                             <#Status>,\n                             <#VerbatimTaxonRank>.\n\
      \n<#ScientificName> a schema:PropertyValue;\n                  schema:propertyID\
      \ dwc:scientificName.\n<#Kingdom> a schema:PropertyValue;\n                \
      \  schema:propertyID dwc:kingdom.\n<#Phylum> a schema:PropertyValue;\n     \
      \             schema:propertyID dwc:phylum.\n<#Order> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:order.\n<#Family> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:family.\n<#Genus> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:genus.\n<#SpecificEpithet> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:specificEpithet.\n<#Status> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:taxonomicStatus.\n<#VerbatimTaxonRank>\
      \ a schema:PropertyValue;\n                  schema:propertyID dwc:verbatimTaxonRank.\n"
description: 'A set of organisms asserted to represent a natural cohesive biological
  unit.

  '
from_schema: https://w3id.org/marco-bolo/csv-input-classes
slots:
- id
- metadataPublisherId
- metadataDescribedForActionId
- name
- taxonScientificName
- taxonKingdom
- taxonPhylum
- taxonOrder
- taxonFamily
- taxonGenus
- taxonSpecificEpithet
- taxonomicStatus
- taxonVerbatimTaxonRank
- taxonIdentifier
- taxonLifeScienceIdentifier
class_uri: schema:Taxon

Induced

name: Taxon
extensions:
  csvw_virtual_triples:
    tag: csvw_virtual_triples
    value: "<> schema:additionalProperty <#ScientificName>,\n                    \
      \         <#Kingdom>,\n                             <#Phylum>,\n           \
      \                  <#Order>,\n                             <#Family>,\n    \
      \                         <#Genus>,\n                             <#SpecificEpithet>,\n\
      \                             <#Status>,\n                             <#VerbatimTaxonRank>.\n\
      \n<#ScientificName> a schema:PropertyValue;\n                  schema:propertyID\
      \ dwc:scientificName.\n<#Kingdom> a schema:PropertyValue;\n                \
      \  schema:propertyID dwc:kingdom.\n<#Phylum> a schema:PropertyValue;\n     \
      \             schema:propertyID dwc:phylum.\n<#Order> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:order.\n<#Family> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:family.\n<#Genus> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:genus.\n<#SpecificEpithet> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:specificEpithet.\n<#Status> a schema:PropertyValue;\n\
      \                  schema:propertyID dwc:taxonomicStatus.\n<#VerbatimTaxonRank>\
      \ a schema:PropertyValue;\n                  schema:propertyID dwc:verbatimTaxonRank.\n"
description: 'A set of organisms asserted to represent a natural cohesive biological
  unit.

  '
from_schema: https://w3id.org/marco-bolo/csv-input-classes
attributes:
  id:
    name: id
    description: "An identifier chosen from the range given to your work package by\
      \ WP1. \nNote that when inputting into CSV files this should not be the full\
      \ URI, \nbut just the last part, e.g. `mbo_0000001`.\n"
    title: MBO Permanent Identifier
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    identifier: true
    alias: id
    owner: Taxon
    domain_of:
    - Action
    - HowTo
    - HowToStep
    - HowToTip
    - Dataset
    - PersonOrOrganization
    - ContactPoint
    - License
    - PropertyValue
    - DataDownload
    - DatasetComment
    - SoftwareSourceCode
    - SoftwareApplication
    - Service
    - EmbargoStatement
    - DefinedTerm
    - Place
    - GeoShape
    - MonetaryGrant
    - Taxon
    - Audience
    range: string
    required: true
    pattern: ^mbo_[_0-9a-z]+$
  metadataPublisherId:
    name: metadataPublisherId
    description: 'The MBO Persistent IDentifier (mPID) of the person who entered this
      row of data.

      '
    title: Data Entry Person (mPID - you)
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:creator
    alias: metadataPublisherId
    owner: Taxon
    domain_of:
    - Action
    - HowTo
    - HowToStep
    - HowToTip
    - Dataset
    - Person
    - Organization
    - ContactPoint
    - License
    - PropertyValue
    - DataDownload
    - DatasetComment
    - SoftwareSourceCode
    - SoftwareApplication
    - Service
    - EmbargoStatement
    - DefinedTerm
    - Place
    - GeoShape
    - MonetaryGrant
    - Taxon
    - Audience
    range: PersonOrOrganization
    required: true
    multivalued: false
  metadataDescribedForActionId:
    name: metadataDescribedForActionId
    description: 'The [Action](#action) which resulted in this metadata record being
      described.


      Is likely to be the Action associated with a MARCO-BOLO Task.

      '
    title: Data Entered for Action (mPID)
    comments:
    - "Uses the <https://w3id.org/marco-bolo/isResultOf> predicate but ultimately\
      \ ends up being \nrepresented as a triple in the form `<action> schema:result\
      \ <this-entity>`.\n"
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: mbo:isResultOf
    alias: metadataDescribedForActionId
    owner: Taxon
    domain_of:
    - Action
    - HowTo
    - HowToStep
    - HowToTip
    - Dataset
    - Person
    - Organization
    - ContactPoint
    - License
    - PropertyValue
    - DataDownload
    - DatasetComment
    - SoftwareSourceCode
    - SoftwareApplication
    - EmbargoStatement
    - DefinedTerm
    - Place
    - GeoShape
    - MonetaryGrant
    - Taxon
    - Audience
    range: Action
    required: true
    multivalued: false
  name:
    name: name
    description: A name/title
    title: Name
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Taxon
    domain_of:
    - Action
    - HowTo
    - HowToStep
    - HowToTip
    - Dataset
    - Organization
    - ContactPoint
    - License
    - PropertyValue
    - DataDownload
    - SoftwareSourceCode
    - SoftwareApplication
    - Service
    - Place
    - GeoShape
    - MonetaryGrant
    - Taxon
    - Audience
    range: string
    required: true
    multivalued: false
  taxonScientificName:
    name: taxonScientificName
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#ScientificName'
    description: "The full scientific name, with authorship and date information if\
      \ known. When forming part of a dwc:Identification, \nthis should be the name\
      \ in lowest level taxonomic rank that can be determined. This term should not\
      \ contain \nidentification qualifications, which should instead be supplied\
      \ in the dwc:identificationQualifier term.\n\nActually represents dwc:scientificName\
      \ via a schema:PropertyValue (schema:additionalProperty/schema:value).\n"
    title: Scientific Name
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonScientificName
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonKingdom:
    name: taxonKingdom
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#Kingdom'
    description: 'The full scientific name of the kingdom in which the dwc:Taxon is
      classified.


      Actually represents dwc:kingdom via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Kingdom
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonKingdom
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonPhylum:
    name: taxonPhylum
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#Phylum'
    description: 'The full scientific name of the phylum or division in which the
      dwc:Taxon is classified.


      Actually represents dwc:phylum via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Phylum
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonPhylum
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonOrder:
    name: taxonOrder
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#Order'
    description: 'The full scientific name of the order in which the dwc:Taxon is
      classified.


      Actually represents dwc:order via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Order
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonOrder
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonFamily:
    name: taxonFamily
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#Family'
    description: 'The full scientific name of the family in which the dwc:Taxon is
      classified.


      Actually represents dwc:family via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Family
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonFamily
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonGenus:
    name: taxonGenus
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#Genus'
    description: 'The full scientific name of the genus in which the dwc:Taxon is
      classified.


      Actually represents dwc:genus via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Genus
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonGenus
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonSpecificEpithet:
    name: taxonSpecificEpithet
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#SpecificEpithet'
    description: 'The name of the first or species epithet of the dwc:scientificName.


      Actually represents dwc:specificEpithet via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Specific Epithet
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonSpecificEpithet
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonomicStatus:
    name: taxonomicStatus
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#Status'
    description: "The status of the use of the dwc:scientificName as a label for a\
      \ taxon. \nRequires taxonomic opinion to define the scope of a dwc:Taxon. \n\
      Rules of priority then are used to define the taxonomic status of the \nnomenclature\
      \ contained in that scope, combined with the experts opinion. \nIt must be linked\
      \ to a specific taxonomic reference that defines the concept.\n\nActually represents\
      \ dwc:taxonomicStatus via a schema:PropertyValue (schema:additionalProperty/schema:value).\n"
    title: Status
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonomicStatus
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonVerbatimTaxonRank:
    name: taxonVerbatimTaxonRank
    extensions:
      csvw_about_url:
        tag: csvw_about_url
        value: '#VerbatimTaxonRank'
    description: 'The taxonomic rank of the most specific name in the dwc:scientificName
      as it appears in the original record.


      Actually represents dwc:verbatimTaxonRank via a schema:PropertyValue (schema:additionalProperty/schema:value).

      '
    title: Verbatim Taxon Rank
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:value
    alias: taxonVerbatimTaxonRank
    owner: Taxon
    domain_of:
    - Taxon
    range: string
    required: true
    multivalued: false
  taxonIdentifier:
    name: taxonIdentifier
    description: 'An identifier for this specific taxon.

      '
    title: Identifier
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:identifier
    alias: taxonIdentifier
    owner: Taxon
    domain_of:
    - Taxon
    subproperty_of: identifier
    range: string
    required: false
    multivalued: false
  taxonLifeScienceIdentifier:
    name: taxonLifeScienceIdentifier
    description: 'The life science identifier for this taxon, for example `urn:lsid:marinespecies.org:taxname:578941`.


      For more information, see https://www.lsid.info/

      '
    title: Life Science Identifier (PID)
    from_schema: https://w3id.org/marco-bolo/csv-input-classes
    rank: 1000
    slot_uri: schema:identifier
    alias: taxonLifeScienceIdentifier
    owner: Taxon
    domain_of:
    - Taxon
    subproperty_of: identifier
    range: URN
    required: false
    multivalued: false
    pattern: ^urn:lsid:[^:\s]+:[^:\s]+:[^:\s]+(:[^:\s]+)?$
class_uri: schema:Taxon